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흰다리새우 Litopenaeus vannamei의 장 내용물로부터 분리된 Rhodobacteraceae bacterium strain SH-1의 유전체

The complete genome sequence of Rhodobacteraceae bacterium strain SH-1 isolated from a gut content of whiteleg shrimp Litopenaeus vannamei

미생물학회지 2019년 55권 4호 p.441 ~ 444
김영삼 ( Kim Young-Sam ) - 부경대학교 미생물학과

김경호 ( Kim Kyoung-Ho ) - 부경대학교 미생물학과

Abstract


Strain SH-1, a novel bacterium belonging to the family Rhodobacteraceae was isolated from a gut content of a whiteleg shrimp Litopenaeus vannamei collected from Tongyeong, South Korea. The complete genome sequence which is 3,892,138 bp with 66.1% G + C content was obtained using PacBio RS II platform. The genome annotation showed that the complete genome contains total 3,772 genes including 3,649 CDSs, 47 RNAs and 76 pseudogenes. Subsystems related to biosynthetic gene clusters for vitamins, amino acids and colicin V production protein were also predicted. The results may provide insights for understanding the symbiotic relationship between the strain and its host shrimp.

키워드

Litopenaeus vannamei; Rhodobacteraceae; complete genome sequence; whiteleg shrimp
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