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Comparative Genomics Platform and Phylogenetic Analysis of Fungal Laccases and Multi-Copper Oxidases

Mycobiology 2020년 48권 5호 p.373 ~ 382
Wu Jiayao, 최재영, Asiegbu Fred O., 이용환,
소속 상세정보
 ( Wu Jiayao ) - University of Helsinki Department of Forest Sciences
최재영 ( Choi Jae-Young ) - Korea Institute of Science and Technology Smart Farm Research Center
 ( Asiegbu Fred O. ) - University of Helsinki Department of Forest Sciences
이용환 ( Lee Yong-Hwan ) - Seoul National University Department of Agricultural Biotechnology

Abstract


Laccases (EC 1.10.3.2), a group of multi-copper oxidases (MCOs), play multiple biological functions and widely exist in many species. Fungal laccases have been extensively studied for their industrial applications, however, there was no database specially focused on fungal laccases. To provide a comparative genomics platform for fungal laccases, we have developed a comparative genomics platform for laccases and MCOs (http://laccase.riceblast.snu.ac.kr/). Based on protein domain profiles of characterized sequences, 3,571 laccases were predicted from 690 genomes including 253 fungi. The number of putative laccases and their properties exhibited dynamic distribution across the taxonomy. A total of 505 laccases from 68 genomes were selected and subjected to phylogenetic analysis. As a result, four clades comprised of nine subclades were phylogenetically grouped by their putative functions and analyzed at the sequence level. Our work would provide a workbench for putative laccases mainly focused on the fungal kingdom as well as a new perspective in the identification and classification of putative laccases and MCOs.

키워드

Laccase; multicopper oxidase; database; phylogenetic analysis; fungal genome

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